Modifications to the Manual install docs from: http://docs.brewpi.com/
This is needed to have more than 1 BrewPi connected to your Raspberry Pi/PC. I use a Raspberry Pi with the current version of Jessie (2016-09-23-raspbian-jessie-lite) from https://www.raspberrypi.org/downloads/raspbian/. I will skip past the imaging of jessie as that is documented well on the Raspberry Pi website.

Once imaged, change hostname and timezone using: 
sudo raspi-config

Update the OS and shutdown
sudo apt-get update
sudo apt-get upgrade
sudo shutdown now

Attached 1 Spark v2 to usb port and run the following
ls /dev/ttyACM*
	returned: Results: /dev/ttyACM0
Ran:
udevadm info -a -n /dev/ttyACM0

The relevant looking at parent device section will be the one that contains a line that states ATTRS{product}=="Photon with WiFi"
The important line in the output above is the KERNELS line. Write that line down and save it for later. Repeat this for the # of Spark v2 that will be used.

Write udev rules
sudo nano /etc/udev/rules.d/99-spark.rules
Paste:
	SUBSYSTEM=="tty", KERNEL=="ttyACM*", KERNELS=="1-1.2", SYMLINK+="spark_conical1"
 	SUBSYSTEM=="tty", KERNEL=="ttyACM*", KERNELS=="1-1.3", SYMLINK+="spark_conical2"

Once the udev rules file is created, disconnect your spark and then reload udev before connecting all of the sparks to their respective ports.
sudo /etc/init.d/udev reload

Install required software
sudo apt-get install -y apache2 libapache2-mod-php5 php5-cli php5-common php5-cgi php5 git-core build-essential python-dev python-pip pastebinit
sudo pip install pyserial psutil simplejson configobj gitpython --upgrade

Clone Repository
sudo -u brewpi git clone https://github.com/BrewPi/brewpi-script /home/brewpi/conical1
sudo -u brewpi git clone https://github.com/BrewPi/brewpi-script /home/brewpi/conical2
sudo -u www-data git clone https://github.com/BrewPi/brewpi-www /var/www/html/conical1
sudo -u www-data git clone https://github.com/BrewPi/brewpi-www /var/www/html/conical2

Edit config.cfg
sudo nano /home/brewpi/conical1/settings/config.cfg
	scriptPath = /home/brewpi/conical1/
	wwwPath = /var/www/html/conical1/
	port = /dev/spark_conical1
	altport = /dev/null
	boardType = Particle Photon
sudo nano /home/brewpi/conical1/settings/config.cfg
	scriptPath = /home/brewpi/conical2/
	wwwPath = /var/www/html/conical2/
	port = /dev/spark_conical2
	altport = /dev/null
	boardType = Particle Photon

CRON job
sudo nano /etc/cron.d/brewpi_conical1
	PYTHON=/usr/bin/python
 	SCRIPTPATH=/home/brewpi/conical1
 	* * * * * brewpi $PYTHON $SCRIPTPATH/brewpi.py --config $SCRIPTPATH/settings/config.cfg --checkstartuponly --dontrunfile; [ $? != 0 ] && $PYTHON -u $SCRIPTPATH/brewpi.py --config $SCRIPTPATH/settings/config.cfg 1>$SCRIPTPATH/logs/stdout.txt 2>>$SCRIPTPATH/logs/stderr.txt &

sudo nano /etc/cron.d/brewpi_conical2
	PYTHON=/usr/bin/python
 	SCRIPTPATH=/home/brewpi/conical2
 	* * * * * brewpi $PYTHON $SCRIPTPATH/brewpi.py --config $SCRIPTPATH/settings/config.cfg --checkstartuponly --dontrunfile; [ $? != 0 ] && $PYTHON -u $SCRIPTPATH/brewpi.py --config $SCRIPTPATH/settings/config.cfg 1>$SCRIPTPATH/logs/stdout.txt 2>>$SCRIPTPATH/logs/stderr.txt &

Web Interface config
sudo nano /var/www/html/conical1/config_user.php
	<?php
        // The default settings in config.php are overruled by the settings in config_user.php
        // To use custom settings, copy this file to config_user.php and make your changes in config_user$
        // do not add a php closing tag, because newlines after closing tag might be included in the html

        // Do not include a trailing slash on the path
        $scriptPath = '/home/brewpi/conical1';

sudo nano /var/www/html/conical2/config_user.php
	<?php
        // The default settings in config.php are overruled by the settings in config_user.php
        // To use custom settings, copy this file to config_user.php and make your changes in config_user$
        // do not add a php closing tag, because newlines after closing tag might be included in the html

        // Do not include a trailing slash on the path
        $scriptPath = '/home/brewpi/conical2';

Set permissions and shutdown
sudo chown -R www-data:www-data /var/www/html/conical1
sudo chown -R www-data:www-data /var/www/html/conical2
sudo usermod -a -G www-data pi
sudo usermod -a -G brewpi pi
sudo usermod -a -G www-data,dialout brewpi
sudo chown -R brewpi:brewpi /home/brewpi/conical1
sudo chown -R brewpi:brewpi /home/brewpi/conical2
sudo find /home/brewpi/conical1 -type d -exec chmod g+rwxs {} \;
sudo find /home/brewpi/conical2 -type d -exec chmod g+rwxs {} \;
sudo find /var/www/html/conical1 -type d -exec chmod g+rwxs {} \;
sudo find /var/www/html/conical2 -type d -exec chmod g+rwxs {} \;
sudo shutdown now

Connect Spark v2s and boot up the Raspberry Pi

read the log file for any issues:
/home/brewpi/conical1/logs/stderr.txt
/home/brewpi/conical2/logs/stderr.txt